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1

Gene expression in a paleopolyploid: a transcriptome resource for the ciliateParamecium tetraurelia

Olivier Arnaiz, Jean-François Goût, Mireille Bétermier, Khaled Bouhouche, Jean Cohen, Laurent Duret, Aurélie Kapusta, Eric Meyer, Linda Sperling

Journal:

Year:

2010

Language:

english

File:

PDF, 1.75 MB

english, 2010

2

A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements

Hongseok Ha,Jimin Song,Shuoguo Wang,Aurélie Kapusta,Cédric Feschotte…

Journal:

Year:

2014

Language:

english

File:

PDF, 842 KB

english, 2014

3

Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications

Kapusta, Aurélie, Feschotte, Cédric

Journal:

Trends in Genetics

Year:

2014

Language:

english

File:

PDF, 1.09 MB

english, 2014

4

Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy

Lynch, Vincent J., Nnamani, Mauris C., Kapusta, Aurélie, Brayer, Kathryn, Plaza, Silvia L., Mazur, Erik C., Emera, Deena, Sheikh, Shehzad Z., Grützner, Frank, Bauersachs, Stefan, Graf, Alexander, Youn

Journal:

Year:

2015

Language:

english

File:

PDF, 3.35 MB

english, 2015

5

Ku-Mediated Coupling of DNA Cleavage and Repair during Programmed Genome Rearrangements in the Ciliate Paramecium tetraurelia

Marmignon, Antoine, Bischerour, Julien, Silve, Aude, Fojcik, Clémentine, Dubois, Emeline, Arnaiz, Olivier, Kapusta, Aurélie, Malinsky, Sophie, Bétermier, Mireille, Copenhaver, Gregory P.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.39 MB

english, 2014

6

Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs

Kapusta, Aurélie, Kronenberg, Zev, Lynch, Vincent J., Zhuo, Xiaoyu, Ramsay, LeeAnn, Bourque, Guillaume, Yandell, Mark, Feschotte, Cédric, Hoekstra, Hopi E.

Journal:

Year:

2013

Language:

english

File:

PDF, 5.04 MB

english, 2013

7

A call for benchmarking transposable element annotation methods

Hoen, Douglas R., Hickey, Glenn, Bourque, Guillaume, Casacuberta, Josep, Cordaux, Richard, Feschotte, Cédric, Fiston-Lavier, Anna-Sophie, Hua-Van, Aurélie, Hubley, Robert, Kapusta, Aurélie, Lerat, Emm

Journal:

Year:

2015

Language:

english

File:

PDF, 589 KB

english, 2015

8

Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes

Rius, Nuria, Guillén, Yolanda, Delprat, Alejandra, Kapusta, Aurélie, Feschotte, Cédric, Ruiz, Alfredo

Journal:

Year:

2016

Language:

english

File:

PDF, 1.56 MB

english, 2016

9

Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling

Flygare, Steven, Simmon, Keith, Miller, Chase, Qiao, Yi, Kennedy, Brett, Di Sera, Tonya, Graf, Erin H., Tardif, Keith D., Kapusta, Aurélie, Rynearson, Shawn, Stockmann, Chris, Queen, Krista, Tong, Sux

Journal:

Year:

2016

Language:

english

File:

PDF, 5.04 MB

english, 2016

10

Evolution of bird genomes-a transposon's-eye view

Kapusta, Aurélie, Suh, Alexander

Journal:

Annals of the New York Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.17 MB

english, 2017

11

Dynamics of genome size evolution in birds and mammals

Kapusta, Aurélie, Suh, Alexander, Feschotte, Cédric

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.43 MB

english, 2017

12

Invasive Staphylococcus aureus Infection in Utah Children: Continued Dominance of Methicillin-Sensitive Staphylococcus aureus Over Methicillin-Resistant Staphylococcus aureus

Crandall, Hillary, Kapusta, Aurélie, Killpack, Jarrett, Hernandez, Edgar J., Dickey, Mandy, Nilsson, Kody, Daly, Judy A., Ampofo, Krow, Mulvey, Matthew A., Hulten, Kristina G., Yandell, Mark, Blaschke

Journal:

Open Forum Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 49 KB

english, 2016

13

Improved Genome Assembly and Annotation for the Rock Pigeon ( Columba livia )

Holt, Carson, Campbell, Michael, Keays, David A., Edelman, Nathaniel, Kapusta, Aurélie, Maclary, Emily, Domyan, Eric, Suh, Alexander, Warren, Wesley C., Yandell, Mark, Gilbert, M. Thomas P., Shapiro,

Journal:

G3 Genes|Genome|Genetics

Year:

2018

Language:

english

File:

PDF, 2.06 MB

english, 2018

14

Transposable elements generate regulatory novelty in a tissue-specific fashion

Trizzino, Marco, Kapusta, Aurélie, Brown, Christopher D.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.62 MB

english, 2018